Quantizing Knots and Beyond
Abstract
This paper formulates a generalization of our work on quantum knots to explain how to make quantum versions of algebraic, combinatorial and topological structures. We include a description of previous work on the construction of Hilbert spaces from the states of the bracket polynomial with applications to algorithms for the Jones polynomial and relations with Khovanov homology. The purpose of this paper is to place such constructions in a general context of the quantization of mathematical structures.
Quantizing Knots and Beyond
Louis H. Kauffmana and Samuel J. Lomonaco Jr.b
a Department of Mathematics, Statistics and Computer Science (m/c 249), 851 South Morgan Street, University of Illinois at Chicago, Chicago, Illinois 606077045, USA
b Department of Computer Science and Electrical Engineering, University of Maryland Baltimore County, 1000 Hilltop Circle, Baltimore, MD 21250, USA
Keywords: knots, links, braids, quantum knots, ambient group, groups, graphs, quantum computing, unitary transformation,graphs, groups, bracket polynomial, Khovanov homology
1 Introduction
The purpose of this paper is to show some of the uses and definitions for making quantum information versions of combinatorial and topological structures. We begin in Section 2 by reviewing our previous work on quantum knots where we model the topological information in a knot by a state vector in a Hilbert space that is directly constructed from mosaic diagrams for the knots. In Section 3 we discuss some issues for these models relating topological and quantum entanglement. In Section 4 we give a general definition of quantization of mathematical structures and apply it to the quantization of the set of classical knots (embeddings of a circle into three dimensional space) and the group of homeomorphisms of three dimensional space that acts on this set of embeddings. The Hilbert space that results from this set of embeddings is very large, but descriptive of the sort of knotting phenomena that may occur in nature such as knotted vortices in supercooled Helium or knotted gluon fields. In Section 5 we define quantum Gauss codes and show how to formulate quantum knot theory in the context of these codes. In Section 6 we define a quantum version of directed graphs (see also [18, 19]) and in Section 7 we define a quantization of the words in a group presentation. In the remaining sections of the paper we outline previous work [13] defining Hilbert spaces that correspond to enhanced states of the bracket state sum for the Jones polynomial. These constructions lead to quantum algorithms for the Jones polynomial that are of conceptual interest because of their relationship with Khovanov homology. In this last part of the paper we are quantizing an unusual combinatorial structure  the set of enhanced states of the bracket polynomial. By making this set of states into a Hilbert space, we combine our notions of quantization with Khovanov’s construction that associates a chain complex to a knot diagram. This paper contains a wide range of constructions and it is intended to provide a springboard for discussion of the use of such quantization in quantum information theory. For an in depth view of basic aspects of our quantization procedures the reader is referred to [19, 16]. The present paper is an expanded version of a paper [16] presented at the Spie Conference in Orlando, Florida in April 2011.
2 Mosaic Quantum Knots
We begin by explaining the basic idea of mosaic quantum knots as it appears in our papers [15, 17, 18]. A recent application of quantum knots can be found [27] in a recent paper by Farhi, Gosset, Hassidim, Lutominski and Shor. There the reader will find proof that quantum knots is a moneymaking idea.
View Figures 1, and 2. In the leftmost part of Figure 1 we illustrate a mosaic version of a trefoil knot using a space of tiles. In Figure 2 we show the eleven basic tiles that can be repeated used in tile spaces to make diagrams for any classical knot or link. So far this is a method for depicting knots and links and has no quantum interpretation. However, as in our previous papers, we use the philosophy that given a welldefined discrete set of objects, one can define a vector space with an orhonormal basis that is in onetoone correspondence with these objects. Here we let be the complex vector space with basis in onetoone correspondence with the set of eleven basic tiles shown in Figure 2. An mosaic as shown in Figure 1 is then regarded as an element in the tensor product of copies of . We order the tensor product by consectively going through the rows of the mosaice from left to right and from top to bottom. In this way, knot diagrams represented by mosaics are realized as vectors in where there are factors in this tensor product.
Isotopy moves on the mosaic diagrams are encoded by tile replacements that induce unitary transformations on the Hilbert space. We refer to [17] for the details. The upshot of this fomulation of isotopies of the knots is that the diagrammatic isotopies correspond to unitary transformations of the Hilbert space when the isotopies are restricted to the lattice. In this way we obtain for each a group of isotopies that we call the ambient group. This has the advantage that it turns a version of the Reidemeister moves on knot and link diagrams into a group and it provides for a quantum formulation not just for the knot and link diagrams, but also for their isotopies. Knots and links are usually regarded as entities of a classical nature. By making them into quantum information, we have created a domain of quantum knots and links.
There are many problems and many avenues available for the exploration of quantum knots and links. It is not the purpose of this paper to specialize in this topic. We show them in order to emphasize the idea that one can quantize combinatorial categories by formulating appropriate Hilbert spaces for their objects and morphisms. However, it is worth mentioning that other diagrammatic categories for knots and links can be easily accomodated in the mosaic link framework. View Figure 1 again and examine the middle and right diagrams in the figure. Here we show diagrams containing white and black graphical nodes. These can be interpreted for extensions of knot theory to virtual knots or knotted graph embeddings. One extends the vector space for the basic tiles and then also adds moves that are appropriate for the theory in question. In the case of virtual knot theory and the theory of knotted graphs, there is no problem in making these extensions. We will carry them out in a separate paper. The point of this section has been to remind the reader of our previous work, and to point to these avenues along which it can be extended. The reader will find an in depth treatment of many aspects of these quantization procedures in [19]. After a a discussion of ideas and examples, the present paper concentrates on a quantization related to Khovanov homology in sections 7, 8 and 9.
Lets go back to classical knot theory in mosaic form. One of the problems in studying this theory is the matter of articulating invariants of knots so that they are quantum observables for the theory. Many invariants such as the Jones polynomial and even the bracket model for the Jones polynomial (which we will discuss later in this paper) seem to be resistant to formulation as quantum observables. However, there is a very general result for mosaic quantum knots that is intellectually satisfying that we have proved in our earlier work [17].
Theorem 1. Let be a mosaic knot diagram in an lattice. Then there is a quantum observable such that if and only if is in the orbit of under the action of the ambient group When is not in the orbit, then In other words is a characteristic function for the knottype of in the mosaic lattice.
Proof. Define by the formula
where denotes the orbit of under the action of the ambient group Note that is a finite set. The Theorem follows directly from this definition. //
This Theorem does not make invariants of knots that are efficient to calculate, but it is intellectually satisfying to know that, in principle, in the lattice, we can distinguish two diagrams that are inequivalent by the Reidemeister moves for that lattice size. Furthermore, we can use the characteristic observables to make observables for any real valued classical knot invariant. By a classical knot invariant, we mean a function on standard knot diagrams that is invariant under the usual graphical Reidemeister moves. Such a function is also tautologically defined on mosaic diagrams and is invariant under the mosaic moves for any mosaic lattice. For example, the Jones polynomial [5] is a Laurent polynomial valued invariant. By taking the variable in the Jones polynomial to be a specific real number, we obtain from the Jones polynomial, a realvalued classical knot invariant.
Theorem 2. Let denote a realvalued classical invariant of knots and links. Then there is an observable on the Hilbert space for any mosaic lattice such that for any knot vector in the lattice. In this sense, any realvalued classical knot invariant corresponds to a quantum observable whose eigenvalues are the values of this invariant.
Proof. Define the observable by the formula
where runs over one representative for each ambient group orbit in the mosaic lattice. Here is the observable defined in Theorem 1. The Theorem then follows directly from this definition. //
In this sense, the quantum observables for mosaic quantum knots are universal with respect to realvalued classical knot invariants. It remains to be seen if there are such observables that have a better than classical efficiency of calculation.
Other issues for quantum knots involve considering superpositions of them and properties of these superpositions. We refer the reader to [15, 17, 18] for examples along these lines.

3 Discussion on Quantum Knots and Entanglement
It is worth comparing our formulation of quantum knots with the proposal of Aravind that would make an observable related to a link via the removal of one component of that link. This analogy is of interest in thinking about properties of entanglement. The state
is entangled, but becomes unentangled upon measurement in any of its three tensor factors. The Borommean rings are disentangled when any of the three components is removed. This suggests making a catalog of links in relation to entangled states. However, there are various multiplicities in this situation. See [14] for a previous discussion about this matter. Here we point out that there are infinitely many examples of topologically distinct threecomponent links with the property that they are linked, but become unlinked upon the removal of any one component. See Figure 3 for a depiction of the usual Borommean rings and a second example that we have called the Companion rings. One infinite family is obtained by applying the process leading from the Borommean rings to the Companion rings recursively, or by replacing the twists in the diagram for the selfclasped components by a twists of type for any natural number. It may be that this multiplicity is not the central issue in understanding relationships between topological entanglement and quantum entanglement. The key conceptual point is that topological relationships are independent of distance and quantum entanglement relationships are also independent of distance. Thus one expects that there should be a connection between topology and quantum nonlocality. This conceptual line will be pursued elsewhere.
The reader will note that the notion of component removal as an observable does not occur in our formulation of knots as quantum knots. Component removal is an operation on classical knots and we can consider whether there is a way to formulate it in our category of mosaic quantum knots. It is an open problem whether this can be done in a satisfactory way. The question leads to a number of related questions about operations on mosaic knots. Following analogies from classical knots, we can consider operations such as: remove a component, switch a crossing, smooth a crossing. As we look at operations that one can perform on knot and link diagrams we see that many local operations can be regarded as unitary transformations on the mosaic lattice Hilbert space. For example, switching a single crossing amounts to a simple permutation of basis elements in a single tensor factor of the Hilbert space and hence is a unitary transformation. Smoothing a crossing as in
is also a unitary transformation. Thus we have a complex situation where operations that change the topology of classical knots and links can be construed as unitary operations on quantum knots. The topology preserving operations that correspond to the ambient group are a special subset of the whole group of unitary operations.
Our formulation of quantum knots does allow the superposition of diagrammatic mosaics and hence allows the possibility of entangled states. Such entangled quantum knots exist, and it is now a curious puzzle to see how topological entanglement and quantum entanglement coexist in this category of quantum knots.
4 General Quantization and Quantizing Classical Knots
In this section we give a general definition of quantization, in analogy to that given in [19]. We then apply this definition to the quantization of classical knots that are represented by embeddings of the circle in Euclidean threespace.
Definition. Let be a collection of mathematical objects. We will call the set of motifs to be quantized (see [19]). Let be a group acting on the elements of so that each element of permutes That is, we assume that for each we have a mapping taking for each such this is a 11 correspondence of with itself and so that where and are in and denotes the product of these group elements in We further assume that the identity element in acts as the identity mapping on We then quantize the pair by forming a Hilbert space with orthonormal basis consisting in the set Here we take the elements of to be finite sums of basis elements with complex coefficients and we use the usual Hermitian inner product on this space. Since the group acts on the basis by permuting it, we see that the action extends to an action of on by unitary transformations. We call the new pair (with this unitary action) the quantization of
Classical knot theory is formulated in terms of continuous embeddings of circles into the three dimensional space or the three dimensional sphere (which may be taken as the set of vectors of unit length in Euclidean four dimensional space, or as the onepoint compactification of A knot is represented by an embedding where denotes the circle (i.e. the set of points at unit distance from the origin in the Euclidean plane) with the topology inherited from the Euclidean plane. If is an orientation preserving homeomorphism of , then by forming the composition defined by for , we obtain a new embedding We say that the two embeddings and are equivalent. We say that two embeddings and represent the same knot type if there is an orientation preserving homeomorphism (as above) such that The set of orientation preserving homeomorphisms of forms a group under compositiion. The set of circle embeddings
is acted upon by via composition. In this way the group acts as a group of permutations of the set Note that we mean this action in the sense of group representations. We have that for
for any embedding of a circle in Note also that two elements and of are equal if and only if they are pointwise equal as functions on the circle
Let denote the Hilbert space for which the set of embeddings is an orthonormal basis. We take this space to be the set of finite linear combinations of its basis elements. We denote the basis elements of this Hilbert space by where is an embedding of the circle in . Using as defined above, we have applied to the basis elements of acting as a group of permutations of the basis. These permuations extend to unitary transformations on the entire Hilbert space, giving a quantization of in accord with the definition given in this section.
Remark. See Figure 4 for an illustration of a classical knot equivalence. Note that the quantization of the set embeddings that represent classical knots gives a Hilbert space of uncountable dimension, just as there are an uncountable number of embeddings that can represent knots in three dimensional space. Thus this quantization must be contrasted with the mosiac knots where we have created a hierarchy of finite dimensional spaces and finite groups to handle quantum information for combinatorial knot theory. The quantization of classical knots that is given in this section is intellectually satisfying since it quantizes the full geometrical context for knot theory. This same context of embeddings of objects or placements of structures in three dimensional space is the place where most ideas in geometry, topology and physics are carried out. Thus we expect that this very large quantization of knots will be useful in studying knots in physical situations such as vortices in supercooled helium [26] or the possibility of knotted structures in gluon fields [4].
5 Quantum Gauss Codes
A Gauss code is a method of recording the information inherent in a classical knot diagram. One orients the diagram and labels the crossings in the diagram. Then, choosing a starting point one traverses the diagram, noting the crossing, whether one is traversing the overcrossing part of the crossing and noting the sign of the crossing. One makes an ordered sequence of this information. Thus the righthanded trefoil knot has the code
where the crossings are labeled Here the letters o and u stand respectively for over and under, and all the crossings in the trefoil knot are positive.
For a fixed positive integer let denote the Hilbert space with basis
Quantum Gauss diagrams are regarded as elements of
These correspond to (generalized) Gauss codes that include the blank symbol For example the code
corresponds to
We need to specify to allow a sufficient supply of crossings and to allow blanks to appear when a Reidemeister move on the code removes a crossing. We now specify the Reidemeister moves.
Reidemeister Moves for Quantum Gauss Codes

The first Reidemeister move allows the replacement of with , the replacement of with , the replacement of with , and the replacement of with when these factors occur successively in a tensor product. Since, in any given tensor factor, this transformation amounts to the exchange of two basis vectors, the move is a unitary transformation on the Hilbert space Reidemeister moves are alllowed to go in either direction. Thus, one can replace with

The second Reidemeister move allows the replacement of with and the replacement of with in any larger string in which this pattern appears. Here is an arbitrary tensor product of basis elements of and As in the case of the first move, there are variants of the second move that still hold, obtained by reversing all plus signs to minus signs and all minus signs to plus signs.

The third Reidemeister move allows the replacement of
with
Here and are arbitrary intermediate tensor factors. Note that the move takes the form of replacing
with
for special choices of There are a number of variations of this move. We omit the remaining variations, trusting them to the reader familiar with the classical knot theoretic Reidemeister three move.

We include two more quantum moves that take care of the appearance of the blanks. The first of these is the interchange of with for any basis vector of The second is the cyclic permuation replacing with where the are any basis vectors for
Remark. In Figure 5 we illustrate diagrams for the Reidemeister moves. In the first part of the figure we show the diagrams for the moves without choice of orientation. In the second part of the figure we show diagrams with orientation and labels that correspond to the notations used above. In the case of the third Reidemeister move we have chosen the orientations and the order of traverse of the diagram to correspond to the special case noted above. The reader should now be able to see how to enumberate all possible cases of the third move.
Remark. Along with the Reidemeister moves, we also want to allow permutations of the indices that mark the sites in the Gauss code. Such permutations induce permutations of the basis elements in and hence induce unitary transformations on that preserve the topological type of the knots and links in this combinatorial level.
Remark. Some caveats are important in using these moves. When a move is applied in the direction that exchanges blank elements with nonblank elements, the indices that appear (as in ) must be new indices that are not already in the tensor product. This means that there is a limitation to the performance of this type of move if we take to be finite. If we wish to use infinite dimensional spaces, then there is no limitation. In the case of infinite dimensional spaces for the indices the basic space will be denoted by Since in doing a move in a direction such as one needs the existence of appropriate blanks in the tensor product, some moves that a classical knot theorist might want are not neccesarily available. This is the limitation of the number of the tensor factors in the Hilbert space Again, we can eliminate this restriction by letting be infinite. The individual vectors will then be of the form
where all factors are blank beyond some finite but unlimited number of factors. In this case one can apply the cyclic permutation to the first (as above) factors.
With these remarks, the space of quantum Gauss codes has a an ambient group of generalized Reidemeister moves acting unitarily upon it and we can do quantum knot theory in this category. The Theorems we have proved in the previous section on observables and invariants of mosaic quantum knots apply mutatis mutandis to the quantum Gauss codes. The codes provide a combinatorial way to handle problems in knot theory and they are very close to both computational aspects and to the theory of invariants. One advantage in using the Gauss code formalism for quantum knots is that one can depict them with the usual knot diagrams, however the extra appearance of blanks in the quantum codes must be made to correspond to flattened crossings in the diagrams as is illustrated in Figure 5. Much more remains to be done in this domain.
6 Quantum Graphs
In [18], in section 28, we consider the concept of a quantum graph where the graph is a lattice graph in either a planar lattice (the context for mosaic quantum knots) or a three dimensional lattice (the context for quantum knots in a three dimensional form). In this section we point out a generalization that is implicit in our original definition, allowing a quantization of arbitrary abstract graphs.
Let be a finite simple directed graph in the sense of graph theory. This means that consists in a finite set of nodes (vertices) , denoted by and a finite set of edges denoted by such that every edge is associated with two distinct nodes of in the form of an orderer pair where and are distinct elements of the set of vertices We will denote an edge by its corresponding ordered pair. Note that given two distinct nodes and there are up to two edges associated with them: and A graph is completely specified by giving the vertex set and a set of ordered pairs of distinct nodes, specifying Two graphs are isomorphic if there is a correspondence between their sets of nodes that induces a correspondence between their sets of edges.
Let a graph be specified by for some positive integer with a subset of the set of ordered pairs where Define a complex vector space of dimension with basis the set of all kets of the form where Let denote the cardinality of and define by the formula
where the order of this tensor product is the lexicographic order of the set of ordered pairs in This formula defines a state vector in corresponding to the graph In this way we can formulate quantum graphs just as we have formulated quantum knots. Graph isomorphisms are induced by appropriate permutations of the set and induce unitary transformations on the space We will stop here at this point of definition, and continue the analysis of quantum graphs in a separate paper.
7 Quantizing Words in Groups
In this section the letter will stand for a finitely presented and finitely related group. If has generators then we can consider words in the group as products of these generators including an identity symbol Then we can represent a word in the group by a corresponding tensor product of kets. For example will correspond to the ket
In this way, words in the group presentation correspond to elements of a complex tensor product of a space spanned by the kets , and The same considerations that we have made in the previous constructions allow us to define unitary transformations corresponding to applications of the group laws and the relations in the group. Finite dimensional tensor products hold only words up to a given length, but we can also work with the full set of words in the group by using infinite tensor products of the base space.
Note that essentially the same construction can be applied to any algebraic system with a single (semi) binary operation. This includes the possibility of quantizing sequences of composable morphisms in an arbitrary category. Note also that in making a construction of this kind, we actually quantize all the words in the group.Such quantizations have at the present time little to do with the subject of socalled quantum groups. In the case of the Artin braid group this quantization gives “quantum braids”, a structure precisely analogous to our quantum knots, and treated separately in another paper in these proceedings [19] by S. J. Lomonaco and the present author.
8 Background on the Bracket Polynomial and Jones Polynomial
In the next sections we show how a different approach to forming Hilbert spaces corresponding to combinatorial data leads to a quantum algorithm for the Jones polynomial and to relations with Khovanov homology. This work of the first author appears in [13]. In this mode, we first explain the state summation for the bracket polynomial model for the Jones polynomial, and then we make a Hilbert space that has basis the set of enhanced states for the bracket (to be defined below). There is a natural unitary transformation on this space that encodes the bracket polynomial and gives rise to the corresponding quantum algorithm.
The bracket polynomial [8] model for the Jones polynomial [5, 6, 7, 29] is usually described by the expansion
Here the small diagrams indicate parts of otherwise identical larger knot or link diagrams. The two types of smoothing (local diagram with no crossing) in this formula are said to be of type ( above) and type ( above).
One uses these equations to normalize the invariant and make a model of the Jones polynomial. In the normalized version we define
where the writhe is the sum of the oriented crossing signs for a choice of orientation of the link Since we shall not use oriented links in this paper, we refer the reader to [8] for the details about the writhe. One then has that is invariant under the Reidemeister moves (again see [8]) and the original Jones polynonmial is given by the formula
The Jones polynomial has been of great interest since its discovery in 1983 due to its relationships with statistical mechanics, due to its ability to often detect the difference between a knot and its mirror image and due to the many open problems and relationships of this invariant with other aspects of low dimensional topology.
The State Summation. In order to obtain a closed formula for the bracket, we now describe it as a state summation. Let be any unoriented link diagram. Define a state, , of to be the collection of planar loops resulting from a choice of smoothing for each crossing of There are two choices ( and ) for smoothing a given crossing, and thus there are states of a diagram with crossings. In a state we label each smoothing with or according to the convention indicated by the expansion formula for the bracket. These labels are the vertex weights of the state. There are two evaluations related to a state. The first is the product of the vertex weights, denoted The second is the number of loops in the state , denoted
Define the state summation, , by the formula
where This is the state expansion of the bracket. It is possible to rewrite this expansion in other ways. For our purposes in this paper it is more convenient to think of the loop evaluation as a sum of two loop evaluations, one giving and one giving This can be accomplished by letting each state curve carry an extra label of or We describe these enhanced states below.
Changing Variables. Letting denote the number of crossings in the diagram if we replace by and then replace by the bracket is then rewritten in the following form:
with . It is useful to use this form of the bracket state sum for the sake of the grading in the Khovanov homology (to be described below). We shall continue to refer to the smoothings labeled (or in the original bracket formulation) as smoothings.
Using Enhanced States. We now use the convention of enhanced states where an enhanced state has a label of or on each of its component loops. We then regard the value of the loop as the sum of the value of a circle labeled with a (the value is ) added to the value of a circle labeled with an (the value is We could have chosen the less neutral labels of and so that
and
since an algebra involving and naturally appears later in relation to Khovanov homology. It does no harm to take this form of labeling from the beginning. The use of enhanced states for formulating Khovanov homology was pointed out by Oleg Viro in [28].
Consider the form of the expansion of this version of the bracket polynonmial in enhanced states. We have the formula as a sum over enhanced states
where is the number of type smoothings in and , with the number of loops labeled minus the number of loops labeled in the enhanced state
One advantage of the expression of the bracket polynomial via enhanced states is that it is now a sum of monomials. We shall make use of this property throughout the rest of the paper.
9 Quantum Statistics and the Jones Polynomial
We now use the enhanced state summation for the bracket polynomial with variable to give a quantum formulation of the state sum. Let be on the unit circle in the complex plane. (This is equivalent to letting the original bracket variable be on the unit circle and equivalent to letting the Jones polynmial variable be on the unit circle.) Let denote the complex vector space with orthonormal basis } where runs over the enhanced states of the diagram The vector space is the (finite dimensional) Hilbert space for our quantum formulation of the Jones polynomial. While it is customary for a Hilbert space to be written with the letter we do not follow that convention here, due to the fact that we shall soon regard as a chain complex and take its homology. One can hardly avoid using for homology.
With on the unit circle, we define a unitary transformation
by the formula
for each enhanced state Here and are as defined in the previous section of this paper.
Let
The state vector is the sum over the basis states of our Hilbert space For convenience, we do not normalize to length one in the Hilbert space We then have the
Lemma. The evaluation of the bracket polynomial is given by the following formula
Proof.
since
where is the Kronecker delta, equal to when and equal to otherwise. //
Thus the bracket polyomial evaluation is a quantum amplitude for the measurement of the state in the direction. Since can be regarded as a diagonal element of the transformation with respect to a basis containing this formula can be taken as the foundation for a quantum algorithm that computes the bracket of via the Hadamard test. See [13] for a discussion of how the present description interfaces with the Hadamard test. The reader can examine [1, 2, 12, 22, 24] for more information.
It is useful to formalize the bracket evaluation as a quantum amplitude. This is a direct way to give a physical interpretation of the bracket state sum and the Jones polynomial. Just how this process can be implemented physically depends upon the interpretation of the Hilbert space It is common practice in theorizing about quantum computing and quantum information to define a Hilbert space in terms of some mathematically convenient basis (such as the enhanced states of the knot or link diagram ) and leave open the possibility of a realization of the space and the quantum evolution operators that have been defined upon it. In principle any finite dimensional unitary operator can be realized by some physical system. In practice, this is the problem of constructing quantum computers and quantum information devices. It is not so easy to construct what can be done in principle, and the quantum states that are produced may be all too shortlived to produce reliable computation. Nevertheless, one has the freedom to create spaces and operators on the mathematical level and to conceptualize these in a quantum mechanical framework. The resulting structures may be realized in nature and in present or future technology. In the case of our Hilbert space associated with the bracket state sum and its corresponding unitary transformation there is rich extra structure related to Khovanov homology that we discuss in the next section. One hopes that in a (future) realization of these spaces and operators, the Khovanov homology will play a key role in quantum information related to the knot or link
10 Khovanov Homology and a Quantum Model for the Jones Polynomial
In this section we outline how the Khovanov homology is related with our quantum model. This can be done essentially axiomatically, without giving the details of the Khovanov construction. See [13] for more details. The outline is as follows:

There is a boundary operator defined on the Hilbert space of enhanced states of a link diagram
such that and so that if denotes the subspace of spanned by enhanced states with and then
That is, we have the formulas
and
for each enhanced state Construction of the boundary operator can be found in [13].

Lemma. By defining as in the previous section, via
we have the following basic relationship between and the boundary operator
Proof. This follows at once from the definition of and the fact that preserves and increases to //

From this Lemma we conclude that the operator acts on the homology of We can regard as a new Hilbert space on which the unitary operator acts. In this way, the Khovanov homology and its relationship with the Jones polynomial has a natural quantum context.

For a fixed value of ,
is a subcomplex of with the boundary operator Consequently, we can speak of the homology Note that the dimension of is equal to the number of enhanced states with and Consequently, we have
Here we use the definition of the Euler characteristic of a chain complex
and the fact that the Euler characteristic of the complex is equal to the Euler characteristic of its homology. The quantum amplitude associated with the operator is given in terms of the Euler characteristics of the Khovanov homology of the link
Our reformulation of the bracket polynomial in terms of the unitary operator leads to a new viewpoint on the Khovanov homology as a representation space for the action of The bracket polynomial is then a quantum amplitude that expresses the Euler characteristics of the homology associated with this action. The decomposition of the chain complex into the parts corresponds to the eigenspace decomposition of the operator The reader will note that in this case the operator is already diagonal in the basis of enhanced states for the chain complex We regard this reformulation as a guide to further questions about the relationship of the Khovanov homology with quantum information associated with the link
The internal combinatorial structure of the set of enhanced states for the bracket summation leads to the Khovanov homology theory, whose graded Euler characteristic yields the bracket state sum. Thus we have a quantum statistical interpretation of the Euler characteristics of the Khovanov homology theory, and a conceptual puzzle about the nature of this relationship with the Hilbert space of that quantum theory. It is that relationship that is the subject of this paper. The unusual point about the Hilbert space is that each of its basis elements has a specific combinatorial structure that is related to the topology of the knot Thus this Hilbert space is, from the point of view of its basis elements, a form of “taking apart” of the topological structure of the knot that we are interested in studying.
Homological structure of the unitary transformation. We now prove a general result about the structure of a chain complex that is also a finite dimensional Hilbert space. Let be a chain complex over the complex numbers with boundary operator
with denoting the direct sum of all the , (for some ). Let
be a unitary operator that satisfies the equation We do not assume a second grading as occurs in the Khovanov homology. However, since is unitary, it follows that there is a basis for in which is diagonal. Let denote this basis. Let denote the eigenvalue of corresponding to so that Let be the matrix element for so that
where runs over a set of basis elements so that
Lemma. With the above conventions, we have that for a basis element such that then
Proof. Note that
while
Since the conclusion of the Lemma follows from the independence of the elements in the basis for the Hilbert space. //
In this way we see that eigenvalues will propagate forward from with alternating signs according to the appearance of successive basis elements in the boundary formulas for the chain complex. Various states of affairs are possible in general, with new eigenvaluues starting at some for The simplest state of affairs would be if all the possible eigenvalues (up to multiplication by ) for occurred in so that
where runs over all the distinct eigenvalues of restricted to and is spanned by all in with Let us take the further assumption that for each as above, the subcomplexes
have as their direct sum. With this assumption about the chain complex, define as before, with running over the whole basis for Then it follows just as in the beginning of this section that
Here denotes the Euler characteristic of the homology. The point is, that this formula for takes exactly the form we had for the special case of Khovanov homology (with eigenvalues ), but here the formula occurs just in terms of the eigenspace decomposition of the unitary transformation in relation to the chain complex. Clearly there is more work to be done here and we will return to it in a subsequent paper.
Remark on the density matrix. Given the state we can define the density matrix
With this definition it is immediate that
where denotes the trace of a matrix Thus we can restate the form of our result about Euler characteristics as
In searching for an interpretation of the Khovanov complex in this quantum context it is useful to use this reformulation. For the bracket we have
The Hilbert space for expressing the bracket polynomial as a quantum statistical amplitude is quite naturally the chain complex for Khovanov homology with complex coefficients, and the unitary transformation that is the structure of the bracket polynomial acts on the homology of this chain complex. This means that the homology classes contain information preserved by the quantum process that underlies the bracket polynomial. We would like to exploit this direct relationship between the quantum model and the Khovanov homology to obtain deeper information about the relationship of topology and quantum information theory, and we would like to use this relationship to probe the properties of these topological invariants.
Remark on calculation of homology. In this section we have a Hilbert space with a boundary operator We define (without specifying the grading) the homology of to be
It is a natural to ask for a quantum algorithm to compute . We have not attempted to solve this question in the present paper. A good solution to this question would yield many results, and in our case it would give a quantum algorithm for computing Khovanov homology.
Remark on quantum field theory. In [29, 30] Witten gives a quantum field theoretic interpretation of the Jones polynomial and, more recently, a quantum field theoretic interpretation of Khovanov homology. It is an open problem to compare the quantum context that this paper describes for Khovanov homology with the context constructed in Witten’s work.
References
 [1] D. Aharonov, V. Jones, Z. Landau, A polynomial quantum algorithm for approximating the Jones polynomial, quantph/0511096.
 [2] D. Aharonov, I. Arad, The BQPhardness of approximating the Jones polynomial, quantph/0605181
 [3] R.J. Baxter. Exactly Solved Models in Statistical Mechanics. Acad. Press (1982).
 [4] R. V. Buniy and T. W. Kephart, Glueballs and the universal energy spectrum of tight knots and links. Int.J.Mod.Phys. A20 (2005) 12521259. physics.hepph/0408027.
 [5] V.F.R. Jones, A polynomial invariant for links via von Neumann algebras, Bull. Amer. Math. Soc. 129 (1985), 103–112.
 [6] V.F.R.Jones. Hecke algebra representations of braid groups and link polynomials. Ann. of Math. 126 (1987), pp. 335338.
 [7] V.F.R.Jones. On knot invariants related to some statistical mechanics models. Pacific J. Math., vol. 137, no. 2 (1989), pp. 311334.
 [8] L.H. Kauffman, State models and the Jones polynomial, Topology 26 (1987), 395–407.
 [9] L.H. Kauffman, Statistical mechanics and the Jones polynomial, AMS Contemp. Math. Series 78 (1989), 263–297.
 [10] L.H. Kauffman and S. Lins, TemperleyLieb Recoupling Theory and Invariants of ThreeManifolds, Princeton University Press, Annals Studies 114 (1994).
 [11] L.H. Kauffman, Knots and Physics, World Scientific Publishers (1991), Second Edition (1993), Third Edition (2002).
 [12] L.H. Kauffman, Quantum computing and the Jones polynomial, math.QA/0105255, in Quantum Computation and Information, S. Lomonaco, Jr. (ed.), AMS CONM/305, 2002, pp. 101–137.
 [13] L. H. Kauffman. A quantum model for the Jones polynomial, Khovanov homology and generalized simplicial homology. in “Cross disciplinary advances in quantum computing”, Contemp. Math. Vol. 536, ed. by Mahdavi, Koslover and Brown. Amer. Math. Soc. 2011.
 [14] L. H. Kaufman and S. J. Lomonaco. Quantum Topology and quantum computing, in “Mathematics of Quantum Computation and Quantum Technology” edited by Goong Chen, L. H. Kauffman and S. J. Lomonaco, Chapman and Hall/CRC Applied Mathematics and Nonlinear Science Series (2008), pp. 409504.
 [15] L. H. Kauffman and S. J. Lomonaco Jr., Quantum knots, in Quantum Information and Computation II – Proceedings of Spie, 12 14 April 2004 (2004), ed. by Donkor Pirich and Brandt, Intl. Soc. Opt. Eng, pp. 268284.
 [16] L. H.Kauffman and S. J. Lomonaco, Quantizing Knots, Groups and Graphs, to appear in the SPIE Proceedings, April 2829, (2011).
 [17] S. J. Lomonaco and L. H. Kauffman, Quantum Knots and Mosaics, Journal of Quantum Information Processing, Vol. 7, Nos. 23, (2008), pp. 85  115. Republished inAMS PSAPM/68, (2010), 177208. http://arxiv.org/abs/0805.0339
 [18] S. J. Lomonaco, L. H. Kauffman. Quantum Knots and Lattices, or a Blueprint for Quantum Systems that Do Rope Tricks. in “Quantum Information Science and Its Contributions to Mathematics”, Proc. Symposia in Appl. Math. Vol. 68, ed. by S. J. Lomonaco, Amer. Math. Soc. (2010).arXiv:0910.5891.
 [19] S. J. Lomonaco , and L. H.Kauffman, Quantizing Braids and Other Mathematical Structures: The General Quantization procedure, to appear in the SPIE Proceedings, April 2829, (2011).
 [20] L. H. Kauffman and S. J. Lomonaco Jr. deformed spin networks, knot polynomials and anyonic topological quantum computation. J. Knot Theory Ramifications 16 (2007), no. 3, 267–332.
 [21] L. H. Kauffman and S. J. Lomonaco Jr., The Fibonacci Model and the TemperleyLieb Algebra. International J. Modern Phys. B, Vol. 22, No. 29 (2008), 50655080.
 [22] L. H. Kauffman and S. J. Lomonaco, Jr., A 3Stranded Quantum Algorithm for the Jones Polynomial, Proc. SPIE, vol. 6573, (2007), 65730T165730T13. http://arxiv.org/abs/0706.0020.
 [23] S. J. Lomonaco Jr. and L. H. Kauffman, A Quantum Manual for Computing the Jones Polynomial, Proc. SPIE on Quantum Information and Computation VI, Vol. 6976, (2008), pp. 69760K1 to 69760K4.
 [24] R. Marx, A. Fahmy, L. H. Kauffman, S. J. Lomonaco Jr., A Spörl, N. Pomplun, T. SchulteHerbrüggen, J. M. Myers, and S. J. Glaser, Nuclearmagneticresonance quantum calculations of the Jones polynomial, Physical Review A, (2010).
 [25] C. Nayak, E. H. Simon, A. Stern, M. Freedman, S. Das Sarma, Nonabelian anyons and topological quantum computation. Rev. Modern Phys. 80 (2008), no. 3, 1083–1159.
 [26] M. Rasetti and T. Regge, Vortices in He II, current algebras and quantum knots. Physica 80A (1975) 217233. North Holland Pub. Co.
 [27] E. Farhi, D. Gosset, A. Hassidim, A. Lutomirski, P. Shor, Quantum money from knots. arXiv:1004.5127 [quantph].
 [28] O. Viro (2004), Khovanov homology, its definitions and ramifications, Fund. Math., 184 (2004), pp. 317342.
 [29] E. Witten. Quantum Field Theory and the Jones Polynomial. Comm. in Math. Phys. Vol. 121 (1989), 351399.
 [30] E. Witten. Fivebranes and knots. arXiv:1101.3216 [math.GT].