# Coupling of Active Motion and Advection Shapes Intracellular Cargo Transport

###### Abstract

Intracellular cargo transport can arise from passive diffusion, active motor-driven transport along cytoskeletal filament networks, and passive advection by fluid flows entrained by such motor/cargo motion. Active and advective transport are thus intrinsically coupled as related, yet different representations of the same underlying network structure. A reaction-advection-diffusion system is used here to show that this coupling affects the transport and localization of a passive tracer in a confined geometry. For sufficiently low diffusion, cargo localization to a target zone is optimized either by low reaction kinetics and decoupling of bound and unbound states, or by a mostly disordered cytoskeletal network with only weak directional bias. These generic results may help to rationalize subtle features of cytoskeletal networks, for example as observed for microtubules in fly oocytes.

###### pacs:

87.16.Wd, 47.61.Ne, 47.63.Jd, 87.19.rh Copyright (2012) by the American Physical Society.Intracellular transport of proteins, vesicles or entire organelles is required by virtually all cells to perform functions as diverse as cell division, intracellular trafficking and patterning of morphogens during development. To realize these different functions, eukaryotic cells can utilize three different forms of cargo transport: passive diffusion by thermally driven Brownian motion, active transport by motor proteins on cytoskeletal networks Vale2003 (), and passive advection by intracellular flows of bulk cytoplasm. Such cytoplasmic flows have been studied in plants LubiczGoldstein2010 () as well as animals, including rats, mice, worms and flies Bradke1997 (); Ajduk2011 (); Niwayama2011 (); Serbus2005 (). While some cytoplasmic flows result from contractions of actin networks Ajduk2011 (); Mayer2010 (); Niwayama2011 (), cytoplasmic streaming in flies, Characean algae and pollen tubes is driven by forces from the motion of the actively transported cargo itself Palacios2002 (); Shimmen2007 () (Fig. 1A). Hence, active and advective transport can be intrinsically coupled as two related, yet different representations of the underlying cytoskeletal network. This raises intriguing questions of how changes in cytoskeletal network architecture and binding kinetics affect the distribution of cargo when active and advective transport are coupled (Fig. 1B,C).

Existing theoretical work has largely focused on the physical mechanisms of flows Nothnagel1982 () and either on the combination of diffusion and active transport Dinh2006 (); Klumpp2005 (); Brangwynne2009a (), or on the combination of diffusion and advective transport Goldstein2008 (); vandeMeent2008 (). The system-level implications of interactions between all three transport mechanisms are poorly understood Heaton2011 (). Here, we study implications of coupled active and advective transport for cargo localization to a target zone in a confined geometry, a situation relevant to establishment and maintenance of cellular asymmetries. Examples include asymmetric cell divisions, cellular morphogenesis, embryonic and pre-embryonic development Li2010 (); Ganguly2012 (). A perfectly aligned cytoskeletal network may be optimal for cargo localization to a target zone if considered alone. Our main finding, however, is that a perfectly aligned network can become suboptimal for localization when coupled to its corresponding recirculatory fluid flow that washes away the cargo once it is dropped off in the target zone (Fig. 1B). Instead, a mostly disordered network with only weak directional bias can become optimal for persistent accumulation of cargo in the target zone by balancing an on-average directional active transport with the suppression of fluid flow caused by it (Fig. 1C).

To formalize this concept, we construct a reaction-advection-diffusion model for the transport of a passive scalar tracer that is advected by two coupled, yet different velocity fields. A motor-velocity field that advects the bound-state cargo concentration captures active motion on a dense cytoskeletal network, while the fluid flow field that advects the unbound cargo concentration represents the cytoplasmic flow. Cargo exchanges between bound and unbound states via interconversion reactions that conserve total mass. The partitioning of cargo between these two states is regulated by a parameter . Together with a diffusion term in the unbound state, the nondimensional transport part of the model is defined as:

(1) | |||||

Here, the nondimensional motor Péclet number and Damköhler number are determined by the typical motor velocity , mean reaction rate , system length and diffusion constant . The advection fields and are coupled since is the solution to the Stokes equations for a viscous incompressible () Newtonian fluid driven by forces from the motor velocity field. Suitably rescaled these are

(2) |

In general, the forces will depend on the concentration of bound cargo, with , but this more complex case is left to future work. Here we focus on the simplest case of constant proportionality between forces and motor velocities, and set for convenience. The solution of (2) with no-slip conditions on the domain boundary was obtained with a finite volume discretization on staggered grids in Matlab using the SIMPLE algorithm Versteeg2007 ().

Consider first the fluid flow field for various degrees of order in the motor velocity field . Before normalizing to a peak magnitude of 1, we define on a two dimensional square wherein attenuates the magnitude of in the form

with denoting the error-function, , and . The function is a weighted sum of the form

where and acts as an order parameter for the directional bias of the motor velocity field. For , consists of an array of vortices perturbed by random numbers from the open interval such that streamlines of neighboring vortices connect (Fig. 2, top left). Similar vortex arrays have been employed extensively for example in percolation theory Isichenko1992 (). Using this as the force field input to the Stokes equations, we find a fluid flow field that mirrors the vortex structure of the forcing, but with a magnitude reduced by a factor of (Fig. 2, top right).

For , the motor field is perfectly aligned along the -direction (Fig. 2, bottom left), giving rise to a Stokes flow field that in the center is aligned along the abscissa as well. In the periphery, however, mass-conservation and incompressibility result in pronounced recirculatory flows in the opposite direction (Fig. 2, bottom right). This demonstrates that the topologies of the motor velocity and fluid flow fields can differ strongly.

For intermediate and even small values of (Fig. 2, middle left), the averaging properties of Stokes flow still yield recirculatory flow fields similar to the perfectly aligned case (Fig. 2, middle right), albeit with ten-fold lower magnitudes. Thus, while the flow topology remains approximately constant over a wide range of the directional bias, variations of represent a possible mechanism to tune the magnitude of the fluid speed and hence its impact on cargo transport.

We next explore the consequences of these flow fields with fixed for the localization of a chemical species to a target zone. Depending on the system described, different initial conditions may be of interest, including a homogeneous distribution or a deposit localized in a starting zone. Final concentration patterns are insensitive to this choice, and results are shown for the homogeneous case with cargo in the unbound state. Cargo found at the end of a simulation in the stripe is considered as localized in the target zone (dashed area in Fig. 1B,C). We first study the effects of the Damköhler number that regulates the strength of chemical exchange between bound and unbound states.

When reactions are fast, cargo transport on a perfectly aligned motor network () and its corresponding flow field (Fig. 2, bottom row) show that the steady-state distributions in bound and unbound states are virtually identical, only scaled by the amounts of cargo in the respective states (Fig. 3 A, B). Cargo deposition in the target zone also occurs with the same dynamics for the two states (Fig. 3C, solid lines). In the limit of very fast reactions () the system can be reduced to a single equation for the total cargo concentration ,

(3) |

in which motor velocity and fluid flow fields mix to form an effective advection field supplemented by an effective diffusion term Klumpp2005 (). This approximation works well even for (Fig. 3C, dashed line).

Transport simulations for slow reactions () show bound cargo accumulating at the extreme distal boundary, while unbound cargo remains mostly homogeneously distributed by diffusion (Fig. 3E, F). Similarly, the dynamics of cargo accumulation separates into a roughly constant contribution from the unbound state, and into a slow increase due to the gradual recruitment of cargo to the bound state (Fig. 3D). Hence, cargo transport in bound and unbound state proceeds virtually independently from one another. Thus, by regulating the strength of chemical reactions between bound and unbound states, controls the degree of coupling of motor velocity and fluid flow fields.

We now vary both the network order parameter and the coupling strength . For we find (Fig. 4, bottom) that the highest amount of cargo localization occurs for a perfectly aligned motor field () and fast reaction kinetics (). Strikingly, however, this combination of perfect alignment and strong mixing of bound and unbound states ceases to be the optimal configuration for cargo accumulation if is increased.

For values of and , respectively, the regime of high cargo accumulation in the target zone first moves towards smaller (Fig 4 middle), and finally (Fig. 4 top) forms a ridge circumventing the point (, ). Simulations at this point for show a rapid accumulation of cargo at (Fig. 5B). This accumulation, however, remains transient due to the impact of the recirculatory backflows that move the bulk cargo towards the sides of the domain and eventually out of the target zone (Fig. 5A).

Strong accumulation of cargo in the target zone still occurs for lower reaction kinetics (Fig. 4, top) that partially decouple bound and unbound states. Alternatively, high reaction kinetics combined with a strong reduction in directional bias to also lead to strong accumulation, albeit at the expense of slow dynamics (Fig. 5C, D). Such changes in have limited effects on the recirculatory flow pattern (Fig. 2). Instead, the reduction in fluid flow velocities stabilizes cargo accumulation in two ways: first by reducing directly the amount of material transported away from the target zone, and second by increasing the time for cargo to bind to the motor velocity field, hence increasing the amount of material that is returned to the target site. This counter-intuitive effect occurs over the wide range for which the fraction of localized cargo at low values of is more than 10 percentage points higher than at . The qualitative features of the parameter space also remain unchanged for simulations performed in a circular geometry, thereby highlighting the generality of the concept.

Any biological cell that requires long-time or persistent cargo localization, for example prior to an asymmetric cell division, or to provide positional information during development, needs to limit dispersive effects. In general, biochemical mechanisms may contribute to stabilize cargo accumulation at the target site. Yet, the coupling between active and advective transport in our model indicates that an only weakly biased cytoskeletal network provides an alternative, physical strategy to balance an on-average directed active transport with suppressed cytoplasmic flows. Rough estimates for organelles or vesicles in Characean algae () or mRNA in fly oocytes () show that biological systems can reach the high Péclet number regimes explored here. This concept may therefore help to rationalize subtle directional biases recently discovered in microtubule networks of fly oocytes Parton2011 ().

We thank H. Doerflinger, J. Dunkel, S. Ganguly, N. Giordano, I.M. Palacios, D. St. Johnston, and F.G. Woodhouse, for discussions. This work was supported in part by the Leverhulme Trust, the European Research Council Advanced Investigator Grant 247333 (R.E.G.), the Boehringer Ingelheim Fonds (P.K.T.), and the EPSRC.

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